The detailed information of tRNA gene sequence


Sequence ID>CHL090900059
Genome IDAJ428413
Search identical group
Phylum/ClassViridiplantae
SpeciesCalycanthus floridus var. glaucus
Start position on genome 53177
End posion on genome 52512
Amino Acid Val
Anticodon TAC
Upstream region at tRNA start position 
atctatgaca
tRNA gene sequence 
AGGGCTATAGCTCAGTTAGGTAGAGCACCTCGTTTACACCGAGAAGGTCTACGGTTCGAG
TCCGTATAGCCCTAtac
Downstream region at tRNA end position 
attacgttta
Secondary structure (Cloverleaf model)
>CHL090900059	Val	TAC
                   a      Atac attacgttta
                     A - T
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     A - T          T G
                    T     A T G C C     A
      T G A        A      | | | | |     G
    T       C T C G       T A C G G     C
    A       | | | |                 T T
    G       G A G C
      G T A        A     AGGTC
                    C   A
                    C - G
                    T - A
                    C - G
                    G - C
                  T       C *
                  T       A
                    T A C
intron: position=39, length=592 (in A-loop)
GCGCGCCAATGCTTTTTCAGAGGAGTCCATCATGCAATCAACAGAATTGATCTTATTGAAAAATCGATGT
CTTACTCCATGGATTCGAGGGAAAAAGAGAACAATAGCCTGACAAATATTTTGTTCGGTCCGATTCAGGT
ACCAATTCAGGTGCCAAATAGAACCCCTTATTGATTGGTTTGATCATTGATAAGGTGAATACCCAGTCCA
TTCAATGCTAGGCATAATGAGTATAAGGACCTCAAAATAACCTCTTTTCATCCTATGAACTTTAAGGTGT
ATGAAGTATCATATTTTACTTTTGGGGTGGATCGATAGAGACTCCATTTAACTTAGGTTGATCTAGGCCG
GAGGCAGACCTACGTCAAGGTAACCCTTCTTTGAAACACTTTGGTATTGCTCCTGGATCAGAATACAAAT
AATGAATCAGAGCGCATGGAGCCATCTCATTATCTTCCTGTCAAGAAAAAATATGGTGGACTAACTGATC
TTTCTATCAGTTAATGAAAGAGCCCAATGCAAAAAAAAACGCATGTTGGGTCTTTGAAACAGTTCGAATC
ATTTCGATAATAATCAGTTTGATCTGTTTTAC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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