The detailed information of tRNA gene sequence


Sequence ID>CHL090900079
Genome IDAJ879453
Search identical group
Phylum/ClassViridiplantae
SpeciesAcorus calamus
Start position on genome 53579
End posion on genome 52899
Amino Acid Val
Anticodon TAC
Upstream region at tRNA start position 
atctatgaca
tRNA gene sequence 
AGGGCTATAGCTCAGTTGGTAGAGCACCTCGTTTACACCGAGAAGGTCTACGGTTCGAGT
CCGTATAGCCCTAtac
Downstream region at tRNA end position 
attatattta
Secondary structure (Cloverleaf model)
>CHL090900079	Val	TAC
                   a      Atac attatattta
                     A - T
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     A - T          T G
                    T     A T G C C     A
      T G A        A      | | | | |     G
    T       C T C G       T A C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          A     AGGTC
                    C   A
                    C - G
                    T - A
                    C - G
                    G - C
                  T       C *
                  T       A
                    T A C
intron: position=39, length=608 (in A-loop)
GCGCGCCAATGCTTTTCAGGGGAGTCCATCATATCAACAGAATTGATCTTATTGATGAATCGATGTCTTA
CTCCACGGATTCGAAAGAAGAGGAGAACAATAGCCTGACAAATAAAGATTAGGTTCTGCCCAATTCAGAT
ATGAATTCAGGTACCAAATAGAACCCATCATTGATTTGATCATTGATAAGGTGAATATACCCAGTCCAGT
CAATGCTAGGCATAATGAGATTAGTATAAGGACCTCAAAACAACCTCTTTTCGTCCTATGAACTTTAAGG
TGTATGAAGTCTCATATTTGACTCTTAGAGCGGACCGATAGAGACTCAATTTAACTTAGGTTAAATTGAT
CTAGGCCAGAGGCAGACCTACGTCAAAGTAACCCCTCTTTGAAACACTTTGGTATTGCTCCTAGATCGGA
AGCCCAATCATGAATCAGAGCACATGGAGCCATCTTATTATCTTCTTAGCTTCCCGGGAAGAAAAAAATA
TGGTGCAATAACTGATCTTTACATCGGTTGATGAAAGAGCCCAATGCAATAAAAATGCATGTTGGGTCTT
TGAAACAGTTCGAATCATTTCGATAATAATAAGTTTGATCTGTTTTAC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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