The detailed information of tRNA gene sequence


Sequence ID>CHL090900081
Genome IDAJ879453
Search identical group
Phylum/ClassViridiplantae
SpeciesAcorus calamus
Start position on genome 102725
End posion on genome 103596
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
cttggctcgg
tRNA gene sequence 
GGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCAAGGCGGATGTCAGCGGTTCGAGT
CCGCTTATCTCCgctc
Downstream region at tRNA end position 
gtgaacttag
Secondary structure (Cloverleaf model)
>CHL090900081	Ala	TGC
                   g      gctc gtgaacttag
                     G - C
                     G - C
                     G + T
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     T C G C C     A
      T G A        A      | | | | |     G
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          T     ATGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    T + G
                  C       A *
                  T       A
                    T G C
intron: position=39, length=799 (in A-loop)
TTGGGTCGTTGCGATTACGGGTTGGATGTCTAATTGTCCAGGCGGTAATGATAGTATCTTGTACCTGAAC
CGGTGGCTCACTTTTTCTAAGTAATGGGGAAGAGGACCGAAACATGCCACTGAAAGACTCTACTGAGACA
AAGATGGGCTGTCAAGAACGTAGAGGAGGTAGGATGGGCAGTTGGTCAGATCTAGTATGGATCGTACATG
GACGATAGTTGGAGTCGGCGGCTCTCCTAGGGTTCCCTCATCTGGGATCCCTGGGGAAGAGGATCAAGTT
GGCCCTTGCGAACAGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGTGGCAAAAGGAAGGAA
AATCCATGGACCGACCCCATCGTCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGACGCCTTCGGCA
TCCAGGGGTCACGGACCGACCATAGACCCTGTTCAATAAGCGGAACGCATTAGCTTTCCGCTCTTCGGTT
GGGCAGTAAGGGTCGGAGAAGGGCAATCACTCGTTCTTAAAACCAGTATTCTTAAGACCAAAGAGTCGGG
CGAAAAAGGGGGGAGAGCTCTCTGTTCCTGGTTCTTCTGTAGCTGGATCCTCCGGAACCACAAGAATCCT
TAGAATGGGATTCCAACTCAGCACCTTTTGAGATTTTGAGAAGAGTTGCTCTTTGGAGAGCACAGTACGA
TGAAAGTTGTAAGCTGTGTTCGGGGGGGAGTTATTGTCTATCGTTGGCCTCTATGGTAGAATCAGTCGGG
GAGGCCTGAGAGGCGGTGGTTTACCCTGT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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