The detailed information of tRNA gene sequence


Sequence ID>CHL090900084
Genome IDAJ970307
Search identical group
Phylum/ClassViridiplantae
SpeciesCucumis sativus
Start position on genome 9487
End posion on genome 10242
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
ttgcattgta
tRNA gene sequence 
GCGGATATAGTTTAGTGGTAAAACCCTAGCCTTCCAAGCTAACGATGCGGGTTCGATTCC
CGCTATCCGCTtat
Downstream region at tRNA end position 
cttattctta
Secondary structure (Cloverleaf model)
>CHL090900084	Gly	TCC
                   a      Ttat cttattctta
                     G - C
                     C - G
                     G - C
                     G - C
                     A - T
                     T - A
                     A - T          T T
                    T     C G C C C     A
        G A        A      | | | | |     G
      T     T T T G       G C G G G     C
      G     | | | |                 T T
      G     A A A C
        T A        C     CGAT
                    C   A
                    T - A
                    A - T
                    G - C
                    C - G
                  C       A
                  T       A
                    T C C
intron: position=25, length=685
GTGCGATTCGTTCTATTAATCCCTTAATAGTTAAGGGATCCTTCGGGTTGATTAATATTCCGATCAAAAA
CTTTATTTCTTAAAAGGATTTAATCCTTTACCTCTCGATGAAAGATTCGAGGAAAAATAAAAATTCTCGT
GATTTGTATCCAAAAATCTGTTCTAAATTGACAAAATTGGATCATGAAATTACGAAACATAATTTTATTG
AATTGGATCAATACTTCCAATTGAAGGAATAAGAGATCCATGGATAAAGGTGGAATTTTTTCTAATCGTA
ACTAAATCTTCAATTTTTTCTTTGTATAAAGGAGATTGAAGCAAAACAAAATAGCTATTAAACAATTTCT
TTGGTTTACTAGAGACGTCGACATCGTTTTTTAGCTCGGCGGAAACAAACTACTTTTCCTAAGGATTATA
TTAAATAGAAATAGGGAACGAAAATAATACTGGAAAGATTGTTATAATCTCCTCTTGTATAGGGATCATC
TATAAAGCGGGTTCTTTTGAATCATTCAGACGGAAAGGCTGACATAGATGTTATGGATGGCATTTTTTTT
GTTTACATCTTCAATTTTTGAATTTATCCATCTTCCATAAAGGAGCCGAATGAAACCAAAGTTTCACGTT
CGGTTTTGAATTAGAGACGTTCAGTTCAAAATGATGAATCAACGTCGACTATAAC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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