The detailed information of tRNA gene sequence


Sequence ID>CHL090900085
Genome IDAJ970307
Search identical group
Phylum/ClassViridiplantae
SpeciesCucumis sativus
Start position on genome 54541
End posion on genome 53862
Amino Acid Stop
Anticodon TTA
Upstream region at tRNA start position 
acaaggcaca
tRNA gene sequence 
AGGGCTATAGCTCAGTTGGGTAGAAGCACCTCGGTTTACACCGAGAAGGTCTACGGTTCG
AGTCCGTATAGCCCTAtat
Downstream region at tRNA end position 
tattaataat
Secondary structure (Cloverleaf model)
>CHL090900085	Stop	TTA
                   a      Atat tattaataat
                     A - T
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     A - T          T G
                    T     A T G C C     A
    T T G A        A      | | | | |     G
  G         C T C G       T A C G G     C
  G           | | |                 T T
  G         A A G C
    T A G          A     AAGGTC
                    C - G
                    C   A
                    T + G
                    C   C
                    G - C *
                  G       A
                  T       C
                    T T A
intron: position=40, length=604
GCGCGCCAATGTTTTTCAGAGAAGTACATCATGTAATCAAAAAAGTTGATCTTATTGAGAAATCGATGTC
TTACTCTATTACTTTTAGGGAACAAAACAAGAGAACAGTAGCCTGACAAAAAGTTCGGTCCGAATCGAGT
GCCCCATTTAGGCACTAAAAAAATCCATCATTGATTTGAGATATTGATAAGGTGAATACCCAGTCTATTC
AATGCTAGGCATAATGAGTATCAGGACCTCAAAAAAAAAAATGATCTTTCGTCCTATCTTATGAACAACT
TTAAGGTGTATGAAGTTTCATATTTTATTCTTTAAGCAGAAGCAGGACGATAGAGATTCCATTTAACTTA
AGTTGATCTAGGTCAGAAGCATACCTACGTCAGGATAACCCTTCTTTGAAACACTTTGGTAGTGCTCCGA
GATTCGAATCAAAATAATGAATCAGAGCACATGGAACCATCTCCCTTTACTTTCTGCCAAGAAAAAATAT
GGTAGACTAACTTATTTATAACAGTTAATGAAAGAGCCCAATGCAAAAAAATGCATGTTGGGTCTTTGAA
ACAGTTCAAATTATTTTGATAATAATAAGTTTGATCTGTTTTAC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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