The detailed information of tRNA gene sequence


Sequence ID>CHL090900100
Genome IDAM711640
Search identical group
Phylum/ClassViridiplantae
SpeciesCuscuta reflexa
Start position on genome 55335
End posion on genome 55970
Amino Acid Val
Anticodon TAC
Upstream region at tRNA start position 
gcactaaggg
tRNA gene sequence 
GGGCTATAGCTCAGTTGGTAGAGCACCTCGTTTACACCGAGAAGGTCTACGGTTCGAGTC
CGTATAGCCCTAta
Downstream region at tRNA end position 
acttctagtt
Secondary structure (Cloverleaf model)
>CHL090900100	Val	TAC
                   g      TAta acttctagtt
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     A - T
                     T - A          G A
                    A     T G C C T     G
        T G        G        +     +     C
      T     A C T C       C T A C G     T
      G         +                   G T
      G     G A G C
        T A        A     AGGT
                    C   A
                    C - G
                    T - A
                    C - G
                    G - C
                  T       C *
                  T       A
                    T A C
intron: position=39, length=564 (in A-loop)
GCGCGCCAATGTTGTTCGGGGAAGTCCATTTTAAAATGATATAATAAAGGGATCTTTTTTTTAGTTATGT
CTTACTCCATAACTTTGAGGGAACCATAGCCGGACAAAGGAACTGTGTCCGATTTAGTTGGGTGGGCACC
CATTTAGGTGCCAAACAGACTCCAGGAGATATTGATAGGGTGAATTGCTAGCCTCTTCAATGTTAGGCCT
AATGAAATGAGGATAAGGACCTCAAAAAAATATCTTTTCCATTATCTGAACTTTAAGGTGTATCAAGTTT
CATATTTGATTTTGAAAGGGTAGAGACTTCATTTCACTTAGGATGATCTAGACCATAGGCAGACCTACGT
CAAGATAACCCCCCCGCTCTTGAAATGAAACACTTCGGTAGTGCTCCCGGATCATAATCTCAAAAAATGA
ATCGGAGCACAAGGAGCCCTTTCTTTTTCTTATTTTTCTTTCAAGAAAAAAGATGGGAGACTTAGGAAAA
AAATGCGGGTTGGGTCTTTGAAATAGTTCAGATCATTTTGATATTTTAGAATTAAGTAGTTTGATCTGTT
TTAC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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