The detailed information of tRNA gene sequence


Sequence ID>CHL090900122
Genome IDAP004638
Search identical group
Phylum/ClassViridiplantae
SpeciesPsilotum nudum
Start position on genome 49344
End posion on genome 49812
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
attgaaatga
tRNA gene sequence 
GGGGGTATGGCGTAATGGTAGACGCTGCGGACTTAAAATCCGTTGGTCTTTGCAGACCGT
GAGGGTTCAAGTCCCTCTACCCCCccaa
Downstream region at tRNA end position 
tgtatttttc
Secondary structure (Cloverleaf model)
>CHL090900122	Leu	TAA
                   a      ccaa tgtatttttc
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C
                     T - A
                     A - T          T G
                    T     C T C C C     A
      T A A        G      | | | | |     A
    G       T G C G       G A G G G     C
    G       | | | |                 T T
    T       A C G C
      A G          T     TGGTCTTTGCAGACCGT
                    G + T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T*A A
intron: position=35, length=384 (in A-loop)
AAAGAAATTGAGCTTTAGTTTGGAAACTGACTAAATGAAAGCTTTCAAATTCAGGGAAACCTAGGGAGTT
TTGATAGGCAATCCTGAACCAAATCTCGTTTTTTTCCGACGAGATAGGTGCAGAGACTCAAAGGAAGCTA
TTCTAACGAATAATTAGATTACTAAGTCAAGTATTATCTATGAAAGGATGAACCATATAAATATTCTCTG
TAAAGAATAGATAAGAAATCCTTATTTCTTTTTTTTTTTTATGCAAATATTGCATCCACTTTTGTAGAAA
TATTTTTTATAGATAACTTAATAAATCAATTTTTGGCGAGGATAAAGAGAGAGTCCATTTTTACACTGTT
AAAAACTAACAACGATGCAAATTGTAGTAGAAAG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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