The detailed information of tRNA gene sequence


Sequence ID>CHL090900128
Genome IDAP005672
Search identical group
Phylum/ClassViridiplantae
SpeciesPhyscomitrella patens subsp. patens
Start position on genome 61069
End posion on genome 61691
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
taaaaatgta
tRNA gene sequence 
GCGGGTATAGTTTAGTGGTAAAACCTTAGCCTTCCAAGCTAATGATGTGGGTTCGATTCC
CACTACCCGCtttt
Downstream region at tRNA end position 
tgtatatata
Secondary structure (Cloverleaf model)
>CHL090900128	Gly	TCC
                   a      tttt tgtatatata
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     T - A
                     A - T          T T
                    T     C A C C C     A
        G A        A      | | | | |     G
      T     T T T G       G T G G G     C
      G     | | | |                 T T
      G     A A A C
        T A        C     TGAT
                    T - A
                    T - A
                    A - T
                    G - C
                    C - G
                  C       A
                  T       A
                    T C C
intron: position=25, length=552
GTGTGATTCGTTTTATAATTAACTTAAACATAGTTAAGGGGTCTTTAATTTTATTATTAGATTTTTGACC
AATAACTTTATTTCTAAAAATATTTAAAATTTTTCCTAAAAAAAGAAAAGCATAATTCCTGCAATAATAA
AAAAAAGCAACACGGAATTTTTTCAGCTAAAAATCTATGGATAGAAAACTAAGATATTTTTTTTCGTAAC
TAAATCTTTAATCAAATAGAAATTAAAGCAATTTAGCTTTAAATAATAAATTTAGTTTACTAAATTTATT
TATATTTATAATAAAGCTCGGTAAAAAATATTTTCCTAATGATTTATTTTAATAGAAATAAAGAACGAAG
TAATTATAAATTTTTTTGTTAAAAATTTATAACAGGATCATCTATAAAGTTATTTAATAGAAATAAAAAA
CTAACATAGATGGTATGGATCTACTTAAATATAATAAAAAAAATTTGGTCCATAAAGGAGCCGTATGATA
TTAAAATTTCATATTCGGTTTTGAAATAGAGGCGATAATATAATAAAAACGTCGACTATAAC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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