The detailed information of tRNA gene sequence


Sequence ID>CHL090900176
Genome IDAP009366
Search identical group
Phylum/ClassViridiplantae
SpeciesAethionema cordifolium
Start position on genome 8345
End posion on genome 9140
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
ttgcattgta
tRNA gene sequence 
GCGGGTATAGTTTAGTGGTAAAACCCTTAGCCTTCCAAGCTAACGATGCGGGTTCGATTC
CCGCTACCCGCctag
Downstream region at tRNA end position 
attccccgtt
Secondary structure (Cloverleaf model)
>CHL090900176	Gly	TCC
                   a      ctag attccccgtt
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     T - A
                     A - T          T T
                    T     C G C C C     A
      T G A        A      | | | | |     G
    G       T T T G       G C G G G     C
    G       | |   |                 T T
    T       A A C C
      A A          C     CGAT
                    T - A
                    T - A
                    A - T
                    G - C
                    C - G
                  C       A
                  T       A
                    T C C
intron: position=24, length=724
GTGTGATTCGTTCCTTTAATCTCTTTAATAGTTAAAGGGTCTCTCGGTTTGATTCATCTTCCGATCAAAA
ACTTTATTTCTTAAAAGGATTTAGTCCTTTACCTTTCAATGAAAGATTCAAGGAAGATTATAAATTCTCG
TAATTTGTATCCAAAGACTCTAATCAATTGTAAATTTGGATTCTGAAATTCCGAAACATAATTTTTGAAT
TGGATGATTATTTACAATTCAATAAGTATAACAAGAGGATCCATGGATAAAGCTAGAAAAGTTTCTTTCT
AATCGTAACTAAATCTTCAGTTCTTTTCATTGTTTGGTATAGAAAAAATTGAAGCAAAATAGCTATTAAA
GGAGAACTTTGGTTTACTAAAGACATCGACATATTATATTGTTTTAGCTCGGTGGAAACAAAAGTCTTTT
CCTAAGGATTCCGTTAAATAGAAATAAAGAACGAAGTAACTAGAAAGATTGTTCGAGTTCTCCTTTTCGA
TCTTCTAGAAGGATCATCTAGAAAGCCAAATTTTCTGTCAAAGCACCAAGACGGAAAAAAAAAAGTTAAC
ATAGATGTTATGGGTCGAATTTTAATTTTGATTTAGTTCCGGTTTTTTATATTTAGGCATTTCTCCATCC
ATCATAAAGGAGCCGAATGAAACCAAAGTTTCATGTTCGGTTTTGAATTAGAGACGTTAAAAATATAAAA
ATGATCAATCGACGTCGACTAAAA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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