The detailed information of tRNA gene sequence


Sequence ID>CHL090900189
Genome IDAP009368
Search identical group
Phylum/ClassViridiplantae
SpeciesOlimarabidopsis pumila
Start position on genome 51559
End posion on genome 50886
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
cacaaacaca
tRNA gene sequence 
AGGGCTATAGCTCAGTTAGGTAGAGCACCTCGTTTACACAGGTCTACGGTTCGAGTCCGT
ATAGCCCTAacta
Downstream region at tRNA end position 
agaaattgat
Secondary structure (Cloverleaf model)
>CHL090900189	Lys	TTT
                   a      acta agaaattgat
                     A   A
                     G + T
                     G - C
                     G - C
                     C   C
                     T + G
                     A   A          C T
                    T     T A T G C     G
        G A        A      |   +         A
      T     C T C G       A C G G T     G
      T       | |                   T C
      A     T A G A
        G G        G     TCT
                    C - G
                    A   G
                    C   A
                    C   C *
                    T - A
                  C       C
                  G       A
                    T T T
intron: position=41, length=605
GTGCGCCAAAGTTTTTCAGAGGAGTCCATCACGCAATCAAACAAATTGATTGATCTTATTAAGAAATCGA
TGTCTTACTCCATTACTTTTTTTTTAGGAAAAAAGAGGAGAACAACAGCCTGACATTAGGTCCTATTAAA
GTACCCCGTTAGGTAGGGAATGAATAGAACCCATCATTGATTTGAGATATTGATAGGGTGAATACCCAGT
CTACTCAATGCTAGGTAGAATGAGTATAAGGAACTCAAAAATGATCTTTTCGTCCTATGAACCTTAAGGT
GTATCAAGTTTCATGTTTGATTTTTTAATCAGGATGTTAGAGACTATATTTAACTTAAGTTGATCTAGAC
CAAAAGCAAACCTACGTCAAGAGAACCCTTCTTTGAAACACTTTGGTAGTTCTTCTGTATTGTATTAGAA
TTCAAAAATAATCAATCAGAGTACTTGGAACCATTTCTTATCTTTTTTTTAAGAAAAAATATGGTAGACT
AACTGATCTTTCGATCAGTTAATGAAAGAGCCCAATGCAAAAAAAAATGCATGTTGGGTCTTTGAAAGAG
TTCGAATCATTTTGATAATAATAAGTTCGAACTCTTTTACCGAGC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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