The detailed information of tRNA gene sequence


Sequence ID>CHL090900267
Genome IDAY958085
Search identical group
Phylum/ClassViridiplantae
SpeciesStaurastrum punctulatum
Start position on genome 145631
End posion on genome 146471
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
atttagataa
tRNA gene sequence 
GCGGGTATAGTTTAGTGGTAGAATTATAGCCTTCCAAGCTAATGGTGCGGGTTCGATTCC
CGCTACCCGCagaa
Downstream region at tRNA end position 
tatatttaga
Secondary structure (Cloverleaf model)
>CHL090900267	Gly	TCC
                   a      agaa tatatttaga
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     T - A
                     A - T          T T
                    T     C G C C C     A
        G A        A      | | | | |     G
      T     T T T G       G C G G G     C
      G     + | | +                 T T
      G     G A A T
        T A        T     TGGT
                    A   A
                    T - A
                    A - T
                    G - C
                    C - G
                  C       A
                  T       A
                    T C C
intron: position=25, length=770
GTGTGATTCGTTAAGCTATTTTCTTAGTTGTAGGTTCAAATAGCTTTCAAAATTTATTTGATAACTTCTT
CTCTGTAAAGTGTGTTAAAGAACACTTCACTAGGAAAGTTCTAGTAATATTTTATCTCTAAAAAAGGTAA
TTCTTGATTTGAATAAATTCTCAACGAAATATTCTTCCTTTTTTGATACAAAGAATTTCTAGATAATGGA
AATTCAAGAAAAAGAAATTCAGATTACAACTTTAAAGCGAGATTTCAATACAATTTCTAGTTTTAGAAGT
TTTATTAGACAAGAATCTATGGTTAATTTATTAAGGTATTGAAGATTATCGTTACTAAACTCTTTAAGAA
ATTTTTAGAAATTTCTTAAAACAAGTGTCTTTTAGGTAAATCAAAAGTATTCTCAAATTTGATTCACTTT
TATTAATAAGACCGGTAATTTTACCACCCTAAAGATTTTAAGACAGAGATGAGGAACGAAGTAATTGAAA
AGATAGAAAACAAAGAAGTAAAGTATACTTAAGTCTATCTATTCAAAAGGATCATCTAAGATGTAATTTT
AGATATAAAGGTCTAAAAAAAACGTACGTAGATGCTAAAAATATTTTGCTTTTGCAAAGTGAAAAAATTT
TGTATTTTTAGAGGAGCTGGATGAAAAAAATTTTTCATGTCCGGTTCTGAAGTAGAGTTAGTTATTCAAA
TATTTATACTAATCAAAATAGTATCGTATTTCATTTAATTGGTATATAGAAACAAACTATCGACTATAAC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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