The detailed information of tRNA gene sequence


Sequence ID>CHL090900269
Genome IDAY958086
Search identical group
Phylum/ClassViridiplantae
SpeciesZygnema circumcarinatum
Start position on genome 98245
End posion on genome 99148
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
agaacagcaa
tRNA gene sequence 
GCGGGTATAGTTTAGTGGTAAAACCTTAGCCTTCCAAGCTGATGATGCGGGTTCGATTCC
CGCTACCCGCTttg
Downstream region at tRNA end position 
ttctattaaa
Secondary structure (Cloverleaf model)
>CHL090900269	Gly	TCC
                   a      Tttg ttctattaaa
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     T - A
                     A - T          T T
                    T     C G C C C     A
        G A        A      | | | | |     G
      T     T T T G       G C G G G     C
      G     | | | |                 T T
      G     A A A C
        T A        C     TGAT
                    T - A
                    T + G
                    A - T
                    G - C
                    C - G
                  C       A
                  T       A
                    T C C
intron: position=25, length=833
GTGCGATTCGTTTCAGTCTAGTTCCCGTTCAAGGAGTTGGACTAAACCAGATACATGTCTGGTAATTTAG
TCTCTGTGCAAGAATATGTTCTGTTCCATGAATGTAATGGAACATACGTAATTTCTGTATAAACAAAGAT
ATTATGCTATTAATCTATTTATTATTAGTACAATACTGATATTGTTTAACAAAGCGGAATTTTATGGGAT
TTTACATACAAATTTCAATCAAAGTATTCAAAATTTATTTGTTAAAATCTACGTACGAAGAAAGTCTATG
GAGAATAATAAAGGTGCTATTGAACATCGTGACTAAACATTCTTATTTTTGTTAACCCAAATAAGTTTAG
TTGGCTAAAAAAACAAATCACAATTAGTTTTACTTTGTTGTGCATTATCTATTTGTATAAAAGCCCGACG
TAGATCACCCTCCTAATGATTAAACAAACAGAGATTAGAAACGAGGTAATTGAGTAGTGTAAATTAATAT
GTTATCCTTATTGTAATGTTGTGTCTATTATCTATGATTGAAACACAAATAAATAAAATTAATGTTTCGA
TCATATGAATGGTTAGATTTCATATATCCATGACATCTATATTATTACATGATGTAACACATATTGGATA
AAAGAACATAATTTGTACTCATCAATAGGATCATCTAAAATGCAATCTGTTCTATTTTACAGGTAGAATA
GACAAGCGAACGTAGATGCTGCAAATAATTAATAATAATATCATTTTTGTATTGCAGAGAAGCTGGATGA
GAAAAGCCTCTCATGTCCAGTTTTGCAGTAGAGTTGCTAAGCTTATTTAGCATCGACTATAAC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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