The detailed information of tRNA gene sequence


Sequence ID>CHL090900283
Genome IDDQ229107
Search identical group
Phylum/ClassViridiplantae
SpeciesChara vulgaris
Start position on genome 71478
End posion on genome 70141
Amino Acid Val
Anticodon TAC
Upstream region at tRNA start position 
ttgaagaata
tRNA gene sequence 
AGGGCTATAGCTCAGCGGTAGAGCACCTCGTTTACACCGAGAATGTCTACGGTTCGAATC
CGTATAGCCCTAttt
Downstream region at tRNA end position 
tgatttattt
Secondary structure (Cloverleaf model)
>CHL090900283	Val	TAC
                   a      Attt tgatttattt
                     A - T
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     A - T          T A
                    T     A T G C C     A
        G A        A      | | | | |     G
      C     C T C G       T A C G G     C
      G     | | | |                 T T
      G     G A G C
        T A        A     ATGTC
                    C   A
                    C - G
                    T - A
                    C - G
                    G - C
                  T       C *
                  T       A
                    T A C
intron: position=39, length=1266 (in A-loop)
GTGCGTTAATGTGTTTTGGCAATGGAAATCGGTGAATTCAATTTACAATAGATATCCGATGTAGCAAAGA
TTATGTCTTACTCAGAAAATTCTATTTGGGGAAAATAGCATGACATAGGAGATATTATTGATTGTATATA
AATTATAGATATATAAAACAAGAAATGATATATGTAACAGATCATACAAGTAATTAATATATATTTAATA
TATATATTAATATATATTATATTATATATTATCTCTATATTATATTATATTATTATGATTATATTATATT
TATTATGTATTATGTATATATTAGAATATAAAAATTAGAATATAAAAATTAGAATTATAGACTATTAGTT
AGAATTATAGACTATTAGTATATTAGTATGTATATAATTACAATATATAATTACAATATTATTAAAATAT
TACATTTGTTTCTGTTATTATATGTATGATTCTCAATCAAATAATTCAAAATTTAACTGATATGGTCAAG
TTGTTTTTTTTGCACTCAAAAATAAAACATAAAAGTGAAGTAATTTGTCATTTTCTATGGAATCTAAACG
TGGTGTATAAGATTTCATGATATCTTATCAGGAGGCAGTTACTATAAACTTCTATATTTCGCATTATTGA
TTTTATTCATTTAATCATTTATATGAAAATTTCAATGAAATATATGACAATAAAATTATAATAATAAATA
AAATCACTAAAAGGTATCAACAATACAATATTTATTATATTATTGTATTATTTTTATTTTTTTTATCTAT
TTTATCTATTTAGTAGAAAGTCACAAACACTCAACCTAATTCAGTAATTTTCCATTTTTAAAAAACATTA
GGATTATAGAAATTAATAAAATATATAAGTGGTTATACATGAAATATAGAATAATAAATATAGACTATTC
TATTTAATATGATCTTAATTAAATAGAATAAGAAAATATAGCTTACTTACATACTAGATATAGATATATA
CTAGAGATATATACAGTTTTCATATTTGAATCTATTCTAAATTATTAATGTATTGAATATATATTTATTT
TATTCTTCTAAAATGATGTTATTGTATATCAAATTCATATATCAAATTCATTAATTTAAATAACGGAATC
ATAGTATTTTTCTAAAAGAGAGAAAGGTATGATTTTTTTTTCTTATCAACTTAATAAAATTGATTGTAAA
TTGAAATAAGAAAAATAAAAGAGCCCAATACATTGAAAGATGTAAGTTGAGTTCCAAAAGGTGAAAAATC
CTTTTC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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