The detailed information of tRNA gene sequence


Sequence ID>CHL090900332
Genome IDDQ886273
Search identical group
Phylum/ClassViridiplantae
SpeciesPhaseolus vulgaris cultivar Negro Jamapa
Start position on genome 12556
End posion on genome 13221
Amino Acid Val
Anticodon TAC
Upstream region at tRNA start position 
aaaaagcaca
tRNA gene sequence 
AGGGCTGTAGCTCAGTTAGGTAGAGCACCTCGTTTACACACCGAGAAGGTCTACGGTTCG
AGTCCGTATAGCCCTatat
Downstream region at tRNA end position 
tcctacagat
Secondary structure (Cloverleaf model)
>CHL090900332	Val	TAC
                   a      atat tcctacagat
                     A - T
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     G + T          T G
                    T     A T G C C     A
      T G A        A      | | | | |     G
    T       C T C G       T A C G G     C
    A       | | | |                 T T
    G       G A G C
      G T A        A     GAAGGTC
                    C   A
                    C - G
                    T   C
                    C   C
                    G   A
                  T       C *
                  T       A
                    T A C
intron: position=39, length=590 (in A-loop)
GAGCGCCAATGTTTTTTTCAGAGGAGTTCATCTTGTAATCAAAAAAGTTTATCTTATATCTTATAGTAAG
AAATCGGTGTCTTACTCCATTTTAAGGAACAAAACAAGAGAACACTAGCCTGACAAAGGGTTTAGCCATA
AAATCGAATCCATAATTGATTTGAGATATTGATAAGGTGAATACCCATTTCTCGTCAATGCTAAACGTAA
AGGGTATAACGACCTAAAAAAGATTATCTTTTCTTCCTATCTTATGAACTTTAAGGTGTATGAAGTGTCA
TTTCTTATCTTCTATTTTCATTTTAGTAGGTGGATAAAGAGTCCATTTAACTTAAGTTGATCTAGGCCAG
AAGCAGACCTACGTCAAGATAATCCTTCTTTGAAACACTTTGGTAGTGCTCTTTGATTGTTATACAAATA
AAAAAGAAGAGCATAGGGAATCATCTCTTTATTCTTTACTGTCAAGAAAAAAGATGGTGGACTAACTAAT
ATTTTGATCAGTTAATGAAAAAGCTCAATGCAAAAAAAATGCACGTTGGGTTTTGAAAACAATTGAAATC
ATTGAGATAATAATGAGTTTTAGCTGTTTT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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