The detailed information of tRNA gene sequence


Sequence ID>CHL090900402
Genome IDX04465
Search identical group
Phylum/ClassViridiplantae
SpeciesMarchantia polymorpha
Start position on genome 53652
End posion on genome 53051
Amino Acid Val
Anticodon TAC
Upstream region at tRNA start position 
tcagtattaa
tRNA gene sequence 
AGGGCTATAGCTCAGCGGTAGAGCGCCTCGTTTACACCGAGAATGTCTACGGTTCAAATC
CGTATAGCCCTAaat
Downstream region at tRNA end position 
ttgttttttt
Secondary structure (Cloverleaf model)
>CHL090900402	Val	TAC
                   a      Aaat ttgttttttt
                     A - T
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     A - T          T A
                    T     A T G C C     A
        G A        A      | | | | |     A
      C     C T C G       T A C G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     ATGTC
                    C   A
                    C - G
                    T - A
                    C - G
                    G - C
                  T       C *
                  T       A
                    T A C
intron: position=39, length=530 (in A-loop)
GTGCGCCAATGCTTATCAAAAATTTTTTTTCGATTTGTCGATTCACAACTAAAAGTTTTCTAATTTTTGT
GAAATAGAAAATGTCTTACTCTTTGATTTAATCATTGAGAAAAATAGCCTGACACAAATAATTTCTATTA
TTTATTTGAAATTACATTTTTAGTTGATATGGTTAATTTTTTCTTTTAATGTTATTACATGATGAGAATT
ACGGGGAACTCAAGATATTCTTTTTTTGCTTTATGAAATTTTAAGGTGTATAAAATTTCATATTATTTTA
GCAAGAGAAACTCTTTATTGAGTAAATCCATGTAAAAAACAAACCTAAGTCAATATTTGATAATTTTTGA
AAAACTTTGGGATTGTATTAAAATTTTTTAGAATTTTAAGCAAACGGAACCATCTTATTATTAACAAAAA
AAAGGATGGAAAATAACTAAATTAACACTTAGTTAATAAACGAGCCCAATGCATAAAAACATGCATGTTG
GGTTCTTAAAGCAGTTCTTAATTTAAAAGAACTGTTTTAC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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