The detailed information of tRNA gene sequence


Sequence ID>SRA1000099
Genome IDSRR000287.20476
Search identical group
Phylum/ClassBacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
Species
Start position on genome 109
End posion on genome 22
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
nnnnnnnnnc
tRNA gene sequence 
GGAAGATTGGCTGAGTGGCTTAAAGCGGCACCCTGCTAAGGTGTTGTATCCGCAAGGGTA
CCGAAGGTTCGAATCCTTCATCTTCCGCtt
Downstream region at tRNA end position 
ttatggctca
Secondary structure (Cloverleaf model)
>SRA1000099	Ser	GCT
                   c      GCtt ttatggctca
                     G - C
                     G - C
                     A - T
                     A - T
                     G - C
                     A - T
                     T - A          T A
                    T     C T T C C     A
      T G A        G      | | | | |     G
    G       G T C G       G A A G G     C
    G         | | |                 T T
    C       A A G C
      T T A        G     TGTATCCGCAAGGGTACC
                    G + T
                    C - G
                    A - T
                    C - G
                    C - G
                  C       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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