The detailed information of tRNA gene sequence


Sequence ID>SRA1000100
Genome IDSRR000287.33094
Search identical group
Phylum/ClassBacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
Species
Start position on genome 7
End posion on genome 81
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
nnnnggaaat
tRNA gene sequence 
GGCGAGTTGGCAGAGCGGTGATGCAACAGATTGCAAATCTGTATTAGGCCGGTTCGACTC
CGGTGCTCGCCTCCA
Downstream region at tRNA end position 
tttnnnnnnn
Secondary structure (Cloverleaf model)
>SRA1000100	Cys	GCA
                   t      TCCA tttnnnnnnn
                     G - C
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     T + G          T C
                    T     T G G C C     A
        G A        G      + | | | |     G
      C     G A C G       G C C G G     C
      G       | | |                 T T
      G     A T G C
        T G        A     ATTAG
                    A - T
                    C - G
                    A - T
                    G - C
                    A - T
                  T       A
                  T       A
                    G C A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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