The detailed information of tRNA gene sequence


Sequence ID>SRA1000226
Genome IDSRR001037.146473
Search identical group
Phylum/ClassMarine Viruses from Arctic Ocean (SRP000129)
Species
Start position on genome 109
End posion on genome 20
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
nnnnnngcga
tRNA gene sequence 
GGAGAGTTGGCTGAGTGGTCGAAAGCGTCGCACTCGAAATGCGAAGTGCCGGCAACGGTA
CCGAGGGTTCGAATCCCTCACTCTCCTCCA
Downstream region at tRNA end position 
ttttttctac
Secondary structure (Cloverleaf model)
>SRA1000226	Ser	CGA
                   a      TCCA ttttttctac
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     T - A          T A
                    T     C T C C C     A
      T G A        G      | | | | |     G
    G       G T C G       G A G G G     C
    G         | | |                 T T
    T       A A G C
      C G A        G     AGTGCCGGCAACGGTACC
                    T - A
                    C - G
                    G - C
                    C - G
                    A - T
                  C       A
                  T       A
                    C G A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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