The detailed information of tRNA gene sequence


Sequence ID>SRA1000455
Genome IDSRR001042.165213
Search identical group
Phylum/ClassLine Islands Corals, viral fraction of Christmas Atoll (SRP000134)
Species
Start position on genome 16
End posion on genome 105
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
taacgctcac
tRNA gene sequence 
GGAGAGATGGCTGAGCGGTTGAAAGCACCGGTCTTGAAAACCGGCAAAGGGGCAACTCTT
TCCTGGGTTCGAATCCCAGTCTCTCCGCCA
Downstream region at tRNA end position 
ttatttttaa
Secondary structure (Cloverleaf model)
>SRA1000455	Ser	TGA
                   c      GCCA ttatttttaa
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     A - T          T A
                    T     G A C C C     A
      C G A        G      | | | | |     G
    G       G T C G       C T G G G     C
    G         | | |                 T T
    T       A A G C
      T G A        A     CAAAGGGGCAACTCTTTC
                    C - G
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T G A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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