The detailed information of tRNA gene sequence


Sequence ID>SRA1000493
Genome IDSRR001042.248243
Search identical group
Phylum/ClassLine Islands Corals, viral fraction of Christmas Atoll (SRP000134)
Species
Start position on genome 20
End posion on genome 109
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
aaacttaaat
tRNA gene sequence 
GGAGAGATGGCCGAGCGGTTTAAGGCGCAGGCTTGGAAAGCTTGTGTACTGTCAAAGGTA
CCGTGGGTTCGAATCCCACTCTCTCCGCCA
Downstream region at tRNA end position 
ttaatttaac
Secondary structure (Cloverleaf model)
>SRA1000493	Ser	GGA
                   t      GCCA ttaatttaac
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     A - T          T A
                    T     C A C C C     A
      C G A        G      | | | | |     G
    G       G C C G       G T G G G     C
    G         | | |                 T T
    T       A G G C
      T T A        G     TGTACTGTCAAAGGTACC
                    C - G
                    A - T
                    G + T
                    G - C
                    C - G
                  T       A
                  T       A
                    G G A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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