The detailed information of tRNA gene sequence


Sequence ID>SRA1000494
Genome IDSRR001042.249071
Search identical group
Phylum/ClassLine Islands Corals, viral fraction of Christmas Atoll (SRP000134)
Species
Start position on genome 6
End posion on genome 78
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
nnnnnctaat
tRNA gene sequence 
GCTGATGTAGCTCAGTTGGTAGAGCAGCGGTTTTGTAAACCGCCGGTCGTAGGTTCAAGT
CCTATCATCAGCTtgg
Downstream region at tRNA end position 
tttataattt
Secondary structure (Cloverleaf model)
>SRA1000494	Thr	TGT
                   t      Ttgg tttataattt
                     G - C
                     C - G
                     T - A
                     G - C
                     A - T
                     T - A
                     G - C          T G
                    T     T A T C C     A
      T G A        A      + | | | |     A
    T       C T C G       G T A G G     C
    G       | | | |                 T T
    G       G A G C
      T A          A     CGGTC
                    G - C
                    C - G
                    G - C
                    G - C
                    T - A
                  T       A
                  T       A
                    T G T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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