The detailed information of tRNA gene sequence


Sequence ID>SRA1000561
Genome IDSRR001044.52445
Search identical group
Phylum/ClassStromatolites, viral fraction from Pozas Azules microbiolite in Cuatro Cienagas, Mexico (SRP000136)
Species
Start position on genome 74
End posion on genome 1
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
gcaaaggatc
tRNA gene sequence 
GGCGGTCTGGCTGAATGGCCCAGGCATCCGGCTGCAACCCGGATCATGGGGGTTCGATTC
CCCCGACCGCCTCCn
Downstream region at tRNA end position 
nnnnnnnnnn
Secondary structure (Cloverleaf model)
>SRA1000561	Cys	GCA
                   c      TCCn nnnnnnnnnn
                     G - C
                     G - C
                     C - G
                     G - C
                     G - C
                     T - A
                     C - G          T T
                    T     C C C C C     A
      T A A        G      | | | | |     G
    G       G T C G       G G G G G     C
    G         + | |                 T T
    C       A G G C
      C C          A     TCAT
                    T - A
                    C - G
                    C - G
                    G - C
                    G - C
                  C       C
                  T       A
                    G C A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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