The detailed information of tRNA gene sequence


Sequence ID>SRA1000565
Genome IDSRR001044.61957
Search identical group
Phylum/ClassStromatolites, viral fraction from Pozas Azules microbiolite in Cuatro Cienagas, Mexico (SRP000136)
Species
Start position on genome 7
End posion on genome 83
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
nnnnatcaac
tRNA gene sequence 
GGTCTTGTAGCTCAATTGGTCAGAGCAGCGAACTCATAATTCGCGGGTTGTAGGTTCAAA
TCCTATCAGGACCACCA
Downstream region at tRNA end position 
tttcaatcca
Secondary structure (Cloverleaf model)
>SRA1000565	Met	CAT
                   c      ACCA tttcaatcca
                     G - C
                     G - C
                     T - A
                     C - G
                     T + G
                     T - A
                     G - C          T A
                    T     T A T C C     A
      T A A        A      + | | | |     A
    T       C T C G       G T A G G     C
    G       | | | |                 T T
    G       G A G C
      T C A        A     GGGTT
                    G - C
                    C - G
                    G - C
                    A - T
                    A - T
                  C       A
                  T       A
                    C A T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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