The detailed information of tRNA gene sequence


Sequence ID>SRA1000647
Genome IDSRR001045.220261
Search identical group
Phylum/ClassStromatolites, viral fraction from Rios Mesquites microbiolite in Cuatro Cienagas, Mexico (SRP000137)
Species
Start position on genome 3
End posion on genome 79
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
nnnnnnnnca
tRNA gene sequence 
GGCCCCGTATCACAATCGGTTAGTGGAGCGTCCTCATAAGGCGTAATGTCTCGGTTCAAG
TCCGANCGGGGCCNCCA
Downstream region at tRNA end position 
aaacacggcc
Secondary structure (Cloverleaf model)
>SRA1000647	Met	CAT
                   a      NCCA aaacacggcc
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C          T G
                    T     N A G C C     A
      T A A        A        | | | |     A
    C       C A C T       C T C G G     C
    G       | | | +                 T T
    G       G T G G
      T T A        A     AATGT
                    G + T
                    C - G
                    G - C
                    T + G
                    C - G
                  C       A
                  T       A
                    C A T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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