The detailed information of tRNA gene sequence


Sequence ID>SRA1000668
Genome IDSRR001046.32958
Search identical group
Phylum/ClassSolar Salterns, microbial fraction from low salinity saltern in San Diego, CA (SRP000138)
Species
Start position on genome 92
End posion on genome 17
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
nnnnnnntga
tRNA gene sequence 
GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGATTTGCATTCAGGAGGTCAGCGGTTCGATC
CCGCTAGGCTCCACCA
Downstream region at tRNA end position 
ttcgacggcg
Secondary structure (Cloverleaf model)
>SRA1000668	Ala	TGC
                   a      ACCA ttcgacggcg
                     G - C
                     G - C
                     G + T
                     G - C
                     C - G
                     C - G
                     T - A          C T
                    T     T C G C C     A
      C G A        A      | | | | |     G
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      G A          G     AGGTC
                    C - G
                    C - G
                    T - A
                    G - C
                    A - T
                  T       T
                  T       A
                    T G C
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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