The detailed information of tRNA gene sequence


Sequence ID>SRA1000673
Genome IDSRR001046.43334
Search identical group
Phylum/ClassSolar Salterns, microbial fraction from low salinity saltern in San Diego, CA (SRP000138)
Species
Start position on genome 8
End posion on genome 82
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
nnncggtcga
tRNA gene sequence 
CGGGGCGTAGCGCAGCCTGGTAGCGCATCTGCTTTGGGAGCAGAGGGTCGCTGGTTCGAA
TCCAGTCGCCCCGACtc
Downstream region at tRNA end position 
tttcnnnnnn
Secondary structure (Cloverleaf model)
>SRA1000673	Pro	TGG
                   a      ACtc tttcnnnnnn
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C          T A
                    T     T G A C C     A
      C G A        A      + | | | |     G
    C       C G C G       G C T G G     C
    T       | | | |                 T T
    G       G C G C
      G T A        A     GGGTC
                    T - A
                    C - G
                    T - A
                    G - C
                    C - G
                  T       A
                  T       G
                    T G G
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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