The detailed information of tRNA gene sequence


Sequence ID>SRA1000678
Genome IDSRR001046.59204
Search identical group
Phylum/ClassSolar Salterns, microbial fraction from low salinity saltern in San Diego, CA (SRP000138)
Species
Start position on genome 100
End posion on genome 24
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
ggaacttcgc
tRNA gene sequence 
CGCGGGGTGGAGCAGTTCGGTAGCTCGCCGGGCTCATAACCCGGAGGTCGCAGGTTCAAA
TCCTGTCCCCGCAACCA
Downstream region at tRNA end position 
atcatccctc
Secondary structure (Cloverleaf model)
>SRA1000678	Met	CAT
                   c      ACCA atcatccctc
                     C   A
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     T G T C C     A
      T G A        G      + | | | |     A
    T       C G A G       G C A G G     C
    C       | | | |                 T T
    G       G C T C
      G T A        G     AGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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