The detailed information of tRNA gene sequence


Sequence ID>SRA1000681
Genome IDSRR001046.66343
Search identical group
Phylum/ClassSolar Salterns, microbial fraction from low salinity saltern in San Diego, CA (SRP000138)
Species
Start position on genome 108
End posion on genome 33
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
nnnnnnnnnc
tRNA gene sequence 
GGGGCGGTAGCTCAGCTGGTCAGAGCGGCGGACTCATAATCCGACAGGTCGTGGGTTCGA
GCCCCACCCGCCCCACac
Downstream region at tRNA end position 
gagattcgtg
Secondary structure (Cloverleaf model)
>SRA1000681	Met	CAT
                   c      ACac gagattcgtg
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C
                     G - C          C G
                    T     C A C C C     A
      C G A        A      | | | | |     G
    T       C T C G       G T G G G     C
    G       | | | |                 T T
    G       G A G C
      T C A        G     CAGGTC
                    G   A
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    C A T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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