The detailed information of tRNA gene sequence


Sequence ID>SRA1000704
Genome IDSRR001046.128634
Search identical group
Phylum/ClassSolar Salterns, microbial fraction from low salinity saltern in San Diego, CA (SRP000138)
Species
Start position on genome 109
End posion on genome 33
Amino Acid Asp
Anticodon GTC
Upstream region at tRNA start position 
nnnnnngtgg
tRNA gene sequence 
GCGGTTGTAGCTCAGTTGGTTAGAGTACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAG
CCCCGTCAACCGCGCCA
Downstream region at tRNA end position 
ccgctgccag
Secondary structure (Cloverleaf model)
>SRA1000704	Asp	GTC
                   g      GCCA ccgctgccag
                     G - C
                     C - G
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C          C G
                    T     T G C C C     A
      T G A        A      + | | | |     G
    T       C T C G       G C G G G     C
    G       | | | +                 T T
    G       G A G T
      T T A        A     GGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       C
                  T       A
                    G T C
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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