The detailed information of tRNA gene sequence


Sequence ID>SRA1000708
Genome IDSRR001046.145214
Search identical group
Phylum/ClassSolar Salterns, microbial fraction from low salinity saltern in San Diego, CA (SRP000138)
Species
Start position on genome 1
End posion on genome 74
Amino Acid Ala
Anticodon CGC
Upstream region at tRNA start position 
nnnnnnnnnn
tRNA gene sequence 
GGGGCTGTGGCGCAGTTGGTAGCGCGTCTCGTTCGCAATGAGAAGGTCAGGGGTTCGAAT
CCCCTCAGCTCCACtt
Downstream region at tRNA end position 
tttcctcgct
Secondary structure (Cloverleaf model)
>SRA1000708	Ala	CGC
                   n      ACtt tttcctcgct
                     G - C
                     G - C
                     G + T
                     G - C
                     C - G
                     T - A
                     G - C          T A
                    T     T C C C C     A
      T G A        G      | | | | |     G
    T       C G C G       A G G G G     C
    G       | | | |                 T T
    G       G C G C
      T A          G     AGGTC
                    T - A
                    C - G
                    T - A
                    C - G
                    G + T
                  T       A
                  T       A
                    C G C
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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