The detailed information of tRNA gene sequence


Sequence ID>SRA1000714
Genome IDSRR001046.174553
Search identical group
Phylum/ClassSolar Salterns, microbial fraction from low salinity saltern in San Diego, CA (SRP000138)
Species
Start position on genome 2
End posion on genome 75
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
nnnnnnnnna
tRNA gene sequence 
GGCGGGTTGGTAGAGTGGTTATGCAGCGGATTGCAAATCCGTGTACACCGGTTCGATTCC
GGTACCCGCCTCCA
Downstream region at tRNA end position 
acaaaaatca
Secondary structure (Cloverleaf model)
>SRA1000714	Cys	GCA
                   a      TCCA acaaaaatca
                     G - C
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     T - A          T T
                    T     T G G C C     A
        G A        G      | | | | |     G
      T     G A T G       A C C G G     C
      G       | + |                 T T
      G     A T G C
        T T        A     GTAC
                    G + T
                    C - G
                    G - C
                    G - C
                    A - T
                  T       A
                  T       A
                    G C A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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