The detailed information of tRNA gene sequence


Sequence ID>SRA1000716
Genome IDSRR001046.176009
Search identical group
Phylum/ClassSolar Salterns, microbial fraction from low salinity saltern in San Diego, CA (SRP000138)
Species
Start position on genome 94
End posion on genome 5
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
aatcatggtc
tRNA gene sequence 
GGTACCGTGTCCGAGCGGCCTAAGGTGCAACTCTCGAAAAGTTGTGTGGGTTAACGCCCA
CCGTGGGTTCAAATCCCACCGGTACCGCCA
Downstream region at tRNA end position 
ttctnnnnnn
Secondary structure (Cloverleaf model)
>SRA1000716	Ser	CGA
                   c      GCCA ttctnnnnnn
                     G - C
                     G - C
                     T - A
                     A - T
                     C - G
                     C - G
                     G - C          T A
                    T     C A C C C     A
      C G A        G      | | | | |     A
    G       G C C T       G T G G G     C
    G         | |                   T T
    C       A G G T
      C T A        G     TGTGGGTTAACGCCCACC
                    C - G
                    A - T
                    A - T
                    C - G
                    T - A
                  C       A
                  T       A
                    C G A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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