The detailed information of tRNA gene sequence


Sequence ID>SRA1000785
Genome IDSRR001047.59810
Search identical group
Phylum/ClassTilapia Farm, viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000139)
Species
Start position on genome 15
End posion on genome 103
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
cgccaaacga
tRNA gene sequence 
GGATGATTGCCAGAGTGGCAATGGGTCGGCTTGCTAAGCCGCAGCCGGTGAGGAATCGCC
GCCTAGGTTCGATCCCTAGATCATCCGCCn
Downstream region at tRNA end position 
nnnnnnnnnn
Secondary structure (Cloverleaf model)
>SRA1000785	Ser	GCT
                   a      GCCn nnnnnnnnnn
                     G - C
                     G - C
                     A - T
                     T - A
                     G - C
                     A - T
                     T - A          C T
                    T     G A T C C     A
        G A        G      | | | | |     G
      T     G A C C       C T A G G     C
      G       | | |                 T T
      G     A T G G
        C A        G     AGCCGGTGAGGAATCGCCGC
                    T   C
                    C - G
                    G - C
                    G - C
                    C - G
                  T       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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