The detailed information of tRNA gene sequence


Sequence ID>SRA1000787
Genome IDSRR001047.62770
Search identical group
Phylum/ClassTilapia Farm, viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000139)
Species
Start position on genome 40
End posion on genome 114
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
aaatctaaat
tRNA gene sequence 
GGCCCGTTCGTCTAACGGTTAGGACGCTAGGTTTTCAACCTAGTAACAGGGGTTCGATTC
CCCTACGGGCTACTA
Downstream region at tRNA end position 
tcgagcaagt
Secondary structure (Cloverleaf model)
>SRA1000787	Glu	TTC
                   t      ACTA tcgagcaagt
                     G + T
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     T - A          T T
                    T     T C C C C     A
      C A A        C      | | | | |     G
    G       T C T G       A G G G G     C
    G       + | | |                 T T
    T       G G A C
      T A          G     TAAC
                    C - G
                    T - A
                    A - T
                    G - C
                    G - C
                  T       A
                  T       A
                    T T C
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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