The detailed information of tRNA gene sequence


Sequence ID>SRA1000797
Genome IDSRR001047.90552
Search identical group
Phylum/ClassTilapia Farm, viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000139)
Species
Start position on genome 92
End posion on genome 9
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
acaggcgcct
tRNA gene sequence 
GCCGGTGTGGTGGAATGGTATACACAGAGCACTTAAACTGCTCCGTCGAAAGACATACGG
GTTCGAGTCCCGTTACCGGTACCA
Downstream region at tRNA end position 
aaaatgttnn
Secondary structure (Cloverleaf model)
>SRA1000797	Leu	TAA
                   t      ACCA aaaatgttnn
                     G + T
                     C - G
                     C - G
                     G - C
                     G - C
                     T - A
                     G + T          T G
                    T     T G C C C     A
      T A A        G      | | | | |     G
    G       G G T G       A C G G G     C
    G         | | |                 T T
    T       A C A C
      A T          A     CGTCGAAAGACAT
                    G - C
                    A - T
                    G - C
                    C - G
                    A - T
                  C       C
                  T       A
                    T A A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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