The detailed information of tRNA gene sequence


Sequence ID>SRA1000809
Genome IDSRR001047.133025
Search identical group
Phylum/ClassTilapia Farm, viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000139)
Species
Start position on genome 85
End posion on genome 8
Amino Acid Arg
Anticodon TCT
Upstream region at tRNA start position 
ngcacttagt
tRNA gene sequence 
CTGCGTGAAGCTTAACTGGACAAGCAGCGCACTTCTAATGCGTAGATAGTGTTGGTTCGA
ATCCAATCACGCAGGCTA
Downstream region at tRNA end position 
agtgcttnnn
Secondary structure (Cloverleaf model)
>SRA1000809	Arg	TCT
                   t      GCTA agtgcttnnn
                     C - G
                     T - A
                     G - C
                     C - G
                     G - C
                     T - A
                     G - C          T A
                    A     T A A C C     A
      C A A        A      + | | | |     G
    T       T T C G       G T T G G     C
    G       | | | |                 T T
    G       A A G C
      A C          A     AGATAGT
                    G + T
                    C - G
                    G - C
                    C - G
                    A - T
                  C       A
                  T       A
                    T C T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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