The detailed information of tRNA gene sequence


Sequence ID>SRA1000810
Genome IDSRR001047.133245
Search identical group
Phylum/ClassTilapia Farm, viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000139)
Species
Start position on genome 2
End posion on genome 77
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
nnnnnnnnnc
tRNA gene sequence 
GCCCCTTAAGCTAATGTGGTAATAGCAACCGGCTCATAACCGGTAGGACAGGGTTCGACT
CCCAGGAGGGGCACCA
Downstream region at tRNA end position 
ccaataatct
Secondary structure (Cloverleaf model)
>SRA1000810	Met	CAT
                   c      ACCA ccaataatct
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     T - A
                     T + G          T C
                    A     G A C C C     A
      G T A        A      |   | | |     G
    T       A T C G       C A G G G     C
    G       | | | |                 T T
    G       T A G C
      T A A        A     AGGA
                    A - T
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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