The detailed information of tRNA gene sequence


Sequence ID>SRA1000815
Genome IDSRR001047.141739
Search identical group
Phylum/ClassTilapia Farm, viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000139)
Species
Start position on genome 24
End posion on genome 99
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
taaaggtatt
tRNA gene sequence 
GCTGTAGTAGCTCAGTTGGTAGAGCATCTGATTTGTAATCAGGAGGTCGAGGGTTCAAGT
CCTTCCTACAGCACCA
Downstream region at tRNA end position 
tcaaagnnnn
Secondary structure (Cloverleaf model)
>SRA1000815	Thr	TGT
                   t      ACCA tcaaagnnnn
                     G - C
                     C - G
                     T - A
                     G - C
                     T - A
                     A - T
                     G - C          T G
                    T     C T T C C     A
      T G A        A      | | + | |     A
    T       C T C G       G A G G G     C
    G       | | | |                 T T
    G       G A G C
      T A          A     AGGTC
                    T + G
                    C - G
                    T - A
                    G - C
                    A - T
                  T       A
                  T       A
                    T G T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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