The detailed information of tRNA gene sequence


Sequence ID>SRA1000827
Genome IDSRR001047.187206
Search identical group
Phylum/ClassTilapia Farm, viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000139)
Species
Start position on genome 6
End posion on genome 93
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
nnnnntttta
tRNA gene sequence 
GGATAGTTGGCCGAGCGGTTAAGGCATCAGTTTGCTAAACTGACGTTCCGAAAGGGGCGC
ATAGGTTCGAGTCCTATACTATCCGCCA
Downstream region at tRNA end position 
gatttgggat
Secondary structure (Cloverleaf model)
>SRA1000827	Ser	GCT
                   a      GCCA gatttgggat
                     G - C
                     G - C
                     A - T
                     T - A
                     A - T
                     G - C
                     T - A          T G
                    T     T A T C C     A
      C G A        G      | | | | |     G
    G       G C C G       A T A G G     C
    G         | | |                 T T
    T       A G G C
      T A          A     CGTTCCGAAAGGGGCGC
                    T - A
                    C - G
                    A - T
                    G - C
                    T - A
                  T       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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