The detailed information of tRNA gene sequence


Sequence ID>SRA1000839
Genome IDSRR001047.227995
Search identical group
Phylum/ClassTilapia Farm, viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000139)
Species
Start position on genome 136
End posion on genome 51
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
ntccttaact
tRNA gene sequence 
GCCCGGGTGGTGGAATGGTAGACACGCCGGACTTAAAATCCGGTGCTCCGAAAGGGGTGT
GAGGGTTCAAGTCCCTCCCCGGGTACag
Downstream region at tRNA end position 
nnaaaaaaaa
Secondary structure (Cloverleaf model)
>SRA1000839	Leu	TAA
                   t      ACag nnaaaaaaaa
                     G + T
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C          T G
                    T     C T C C C     A
      T A A        G      | | | | |     A
    G       G G T G       G A G G G     C
    G         | | |                 T T
    T       A C A C
      A G          G     TGCTCCGAAAGGGGTGT
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T A A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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