The detailed information of tRNA gene sequence


Sequence ID>SRA1000844
Genome IDSRR001047.246891
Search identical group
Phylum/ClassTilapia Farm, viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000139)
Species
Start position on genome 100
End posion on genome 27
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
nntaatttat
tRNA gene sequence 
GGTGCTTTGGTCGAGAGGCTAGGCAGAGGACTGCAACTCCTCCTACACAGGTTCGAATCC
TGTAGACACCTCTA
Downstream region at tRNA end position 
aattagttca
Secondary structure (Cloverleaf model)
>SRA1000844	Cys	GCA
                   t      TCTA aattagttca
                     G - C
                     G - C
                     T - A
                     G - C
                     C   A
                     T + G
                     T - A          T A
                    T     T G T C C     A
        G A        G      | | | | |     G
      A     G C T G       A C A G G     C
      G       | + |                 T T
      G     A G G C
        C T        A     CTAC
                    G - C
                    A - T
                    G - C
                    G - C
                    A - T
                  C       C
                  T       A
                    G C A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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