The detailed information of tRNA gene sequence


Sequence ID>SRA1000847
Genome IDSRR001047.267984
Search identical group
Phylum/ClassTilapia Farm, viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000139)
Species
Start position on genome 83
End posion on genome 7
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
tcggagccaa
tRNA gene sequence 
GCCCTTGTAGCTCAGTTGGCTAGAGCATCCGCCTTGTAAGCGGGAGGTCGTCCGTTCGAG
TCGGACCGAGGGCACCA
Downstream region at tRNA end position 
gttatgnnnn
Secondary structure (Cloverleaf model)
>SRA1000847	Thr	TGT
                   a      ACCA gttatgnnnn
                     G - C
                     C - G
                     C - G
                     C - G
                     T - A
                     T + G
                     G - C          T G
                    T     C A G G C     A
      T G A        A      | | | | |     G
    T       C T C G       G T C C G     C
    G       | | | |                 T T
    G       G A G C
      C T A        A     AGGTC
                    T + G
                    C - G
                    C - G
                    G - C
                    C - G
                  C       A
                  T       A
                    T G T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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