The detailed information of tRNA gene sequence


Sequence ID>SRA1000855
Genome IDSRR001047.297182
Search identical group
Phylum/ClassTilapia Farm, viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000139)
Species
Start position on genome 111
End posion on genome 25
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
nnnnngcaac
tRNA gene sequence 
GGGGATGCGGTGCAGTTGGTGAGGCACGGCAGACTGTAAATCTGTTACTTCTACGTTGAG
TTGGTTCGAATCCAACCATCCCCACCA
Downstream region at tRNA end position 
agacccctcc
Secondary structure (Cloverleaf model)
>SRA1000855	Tyr	GTA
                   c      ACCA agacccctcc
                     G - C
                     G - C
                     G - C
                     G - C
                     A - T
                     T - A
                     G - C          T A
                    C     C A A C C     A
    T T G A        G      | | | | |     G
  G         C G T G       G T T G G     C
  G         | | | |                 T T
  T         G C A C
    G A G          G     TACTTCTACGTTGA
                    G + T
                    C - G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       A
                    G T A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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