The detailed information of tRNA gene sequence


Sequence ID>SRA1000858
Genome IDSRR001047.299203
Search identical group
Phylum/ClassTilapia Farm, viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000139)
Species
Start position on genome 75
End posion on genome 1
Amino Acid Arg
Anticodon TCT
Upstream region at tRNA start position 
caccgaacaa
tRNA gene sequence 
CCGACGTTGGCCGAATGGATGAGGCAGCGGGGTTCTATTCCGCCTTATGTGGGTTCGATT
CCTACACGTCGGACCn
Downstream region at tRNA end position 
nnnnnnnnnn
Secondary structure (Cloverleaf model)
>SRA1000858	Arg	TCT
                   a      ACCn nnnnnnnnnn
                     C - G
                     C - G
                     G - C
                     A - T
                     C - G
                     G - C
                     T - A          T T
                    T     C A T C C     A
      T A A        G      | | + | |     G
    G       G C C G       G T G G G     C
    G         | | |                 T T
    A       A G G C
      T G          A     CTTAT
                    G - C
                    C - G
                    G - C
                    G - C
                    G + T
                  G       T
                  T       A
                    T C T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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