The detailed information of tRNA gene sequence


Sequence ID>SRA1000859
Genome IDSRR001047.305119
Search identical group
Phylum/ClassTilapia Farm, viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000139)
Species
Start position on genome 34
End posion on genome 110
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
agattcttaa
tRNA gene sequence 
CCCCCTGTAGCTCAATCGGTTAGAGCGGACGACTCATAATCGTTAGGTTATCGGTTCAAG
TCCGGTCGGGGGGACCA
Downstream region at tRNA end position 
atatttcnnn
Secondary structure (Cloverleaf model)
>SRA1000859	Met	CAT
                   a      ACCA atatttcnnn
                     C - G
                     C - G
                     C - G
                     C - G
                     C - G
                     T + G
                     G - C          T G
                    T     T G G C C     A
      T A A        A      | + | | |     A
    C       C T C G       A T C G G     C
    G       | | | |                 T T
    G       G A G C
      T T A        G     AGGTT
                    G + T
                    A - T
                    C - G
                    G - C
                    A - T
                  C       A
                  T       A
                    C A T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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