The detailed information of tRNA gene sequence


Sequence ID>SRA1000860
Genome IDSRR001047.305230
Search identical group
Phylum/ClassTilapia Farm, viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000139)
Species
Start position on genome 19
End posion on genome 106
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
gggatgccaa
tRNA gene sequence 
GGATGGTTGGCCGAGAGGTTAAGGCAGCGGCTTGCTAAGCCGTCATCGGGAAACCGGTGC
GTTGGTTCGAGTCCAACACCATCCGCCA
Downstream region at tRNA end position 
ttactcnnnn
Secondary structure (Cloverleaf model)
>SRA1000860	Ser	GCT
                   a      GCCA ttactcnnnn
                     G - C
                     G - C
                     A - T
                     T - A
                     G - C
                     G - C
                     T - A          T G
                    T     C A A C C     A
      A G A        G      | | | | |     G
    G       G C C G       G T T G G     C
    G         | | |                 T T
    T       A G G C
      T A          A     CATCGGGAAACCGGTGC
                    G + T
                    C - G
                    G - C
                    G - C
                    C - G
                  T       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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