The detailed information of tRNA gene sequence


Sequence ID>SRA1001217
Genome IDSRR001054.7428
Search identical group
Phylum/ClassSolar Salterns, viral fraction from low salinity saltern in San Diego, CA (SRP000145)
Species
Start position on genome 101
End posion on genome 26
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
ctggctgcnc
tRNA gene sequence 
GGGGGTCTAGCTAATTCTGGTGTAATGCGGCGAACTCATAATTCGTTTGAGGCGAGTTCG
ATCCTCGCGACCCCCAttt
Downstream region at tRNA end position 
aaaaatttct
Secondary structure (Cloverleaf model)
>SRA1001217	Met	CAT
                   c      Attt aaaaatttct
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C
                     T - A
                     C - G          C T
                    T     C G C T C     A
    C T T A        A      | | | | |     G
  T         A T C G       G C G A G     C
  G             | |                 T T
  G         A T G C
    T G T A        G     TTGAG
                    G + T
                    C - G
                    G - C
                    A - T
                    A - T
                  C       A
                  T       A
                    C A T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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