The detailed information of tRNA gene sequence


Sequence ID>SRA1001220
Genome IDSRR001054.11728
Search identical group
Phylum/ClassSolar Salterns, viral fraction from low salinity saltern in San Diego, CA (SRP000145)
Species
Start position on genome 92
End posion on genome 20
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
nnntccatgc
tRNA gene sequence 
GCCGCTCTAGCTTAATTGGCAAAGCCCGTGATTTGTAATCACAGAGATACAAGTTCGAAT
CTTGTGGGCGGCTttt
Downstream region at tRNA end position 
ttggcgtgtc
Secondary structure (Cloverleaf model)
>SRA1001220	Thr	TGT
                   c      Tttt ttggcgtgtc
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     T + G
                     C - G          T A
                    T     T G T T C     A
      T A A        A      | | | | |     G
    T       T T C G       A C A A G     C
    G       | | | |                 T T
    G       A A G C
      C A          C     GAGAT
                    C   A
                    G - C
                    T - A
                    G - C
                    A - T
                  T       A
                  T       A
                    T G T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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