The detailed information of tRNA gene sequence


Sequence ID>SRA1001221
Genome IDSRR001054.23145
Search identical group
Phylum/ClassSolar Salterns, viral fraction from low salinity saltern in San Diego, CA (SRP000145)
Species
Start position on genome 118
End posion on genome 33
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
nnngtagtgg
tRNA gene sequence 
GGAAAGGTGGCAGAATGGTATTGCAGCACTTTGCTAAGGTGTAGGGGTTAATTCCCCTCC
GGGTTCGAATCCCGGTCTTTCCTCCA
Downstream region at tRNA end position 
gactaagaaa
Secondary structure (Cloverleaf model)
>SRA1001221	Ser	GCT
                   g      TCCA gactaagaaa
                     G - C
                     G - C
                     A - T
                     A - T
                     A - T
                     G - C
                     G + T          T A
                    T     G G C C C     A
        A A        G      | | | | |     G
      T     G A C G       C C G G G     C
      G     + | | |                 T T
      G     T T G C
        T A        A     AGGGGTTAATTCCCCT
                    G + T
                    C - G
                    A - T
                    C - G
                    T + G
                  T       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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