The detailed information of tRNA gene sequence


Sequence ID>SRA1001230
Genome IDSRR001056.10387
Search identical group
Phylum/ClassSolar Salterns, viral fraction from medium salinity saltern in San Diego, CA (SRP000146)
Species
Start position on genome 79
End posion on genome 3
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
tatattacaa
tRNA gene sequence 
CGTGCTGTGGAGCAGTCTGGTAGCTCGTTAGGCTCATAACCTAAAGGTCGCGGGTTCAAA
TCCCGCCAGCGCCACTA
Downstream region at tRNA end position 
ccnnnnnnnn
Secondary structure (Cloverleaf model)
>SRA1001230	Met	CAT
                   a      ACTA ccnnnnnnnn
                     C   C
                     G - C
                     T + G
                     G - C
                     C - G
                     T - A
                     G - C          T A
                    T     C G C C C     A
      T G A        G      | | | | |     A
    C       C G A G       G C G G G     C
    T       | | | |                 T T
    G       G C T C
      G T A        G     AGGTC
                    T - A
                    T - A
                    A - T
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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